PhyloDiamond.phylo_diamondFunction
Implement PhyloDiamond algorithm (input cf table)
input:
    cf: concordance factor table (first 4 columns should be taxon names, last 3 columns should be cf values)
    m: the number of optimal phylogenetic networks returned
    output_filename: a file name for the output file (or "phylo_diamond.txt" by default)
output:
    top m optimal phylogenetic networks
source
PhyloDiamond.phylo_diamondFunction
Implement PhyloDiamond algorithm (input gene tree file)
input:
    gene_trees_filename
    m: the number of optimal phylogenetic networks returned
    output_filename: a file name for the output file (or "phylo_diamond.txt" by default)
output:
    top m optimal phylogenetic networks
source