PhyloDiamond.phylo_diamond
— FunctionImplement PhyloDiamond algorithm (input cf table)
input:
cf: concordance factor table (first 4 columns should be taxon names, last 3 columns should be cf values)
m: the number of optimal phylogenetic networks returned
output_filename: a file name for the output file (or "phylo_diamond.txt" by default)
output:
top m optimal phylogenetic networks
PhyloDiamond.phylo_diamond
— FunctionImplement PhyloDiamond algorithm (input gene tree file)
input:
gene_trees_filename
m: the number of optimal phylogenetic networks returned
output_filename: a file name for the output file (or "phylo_diamond.txt" by default)
output:
top m optimal phylogenetic networks